Mathias Brochhausen, PhD, MA

Associate Member

Research Program:

Cancer Biology

Faculty Rank:

Professor and Vice-Chair

Campus:

University of Arkansas for Medical Sciences

College:

College of Medicine

Department:

Biomedical Informatics

Cancer Research Interest

Disease Site Focus: No Specific Disease Site
Research Focus Area: Informatics, Health Disparities, Treatment, Diagnosis/ Prognosis
Type of Research: Population Sciences, Translational
Research Keywords: Clinical Cancer Data Management, Cancer Data Integration, Artificial Intelligence for Cancer Research
Research Interest Statement: My current cancer-related research focusses on semantic data integration for cancer clinical data in The Cancer Imaging Archive (TCIA). I have multiple years of experience using Artificial Intelligence methods to harmonize and integrated biomedical data, including cancer research data and drug administration data. I want to support the Cancer Center's mission harnessing innovative data management and data mining methodologies.

Contact Information

Email Address: MBROCHHAUSEN@UAMS.EDU
Profiles Research Networking Software: View Profile

Active Grants

Patient-Centered Outcomes Research Institute – RI-FLORIDA-01-MC
“OneFlorida+ Clinical Research Network Phase 4”
Principal Investigator
9/1/2024 – 2/28/2026

Recent Publications

Du X, Dobrowolski A, Brochhausen M, [et al.]. Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography-Mass Spectrometry Metabolomics Data Processing. Journal of the American Society for Mass Spectrometry. 2025. PMID: 39755959.
Blobel B, Oemig F, Ruotsalainen P, [et al., including Brochhausen M]. The Representational Challenge of Integration and Interoperability in Transformed Health Ecosystems. Journal of personalized medicine. 2024 15(1). PMID: 39852197. PMCID: PMC11766756.
Mehta D, Whorton JM, Shahriari R, [et al., including Brochhausen M]. Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems. CEUR workshop proceedings. 2024 3939. PMID: 40196293. PMCID: PMC11973606.
Blobel B, Oemig F, Ruotsalainen P, [et al., including Brochhausen M]. The Representational Challenge for Designing and Managing 5P Medicine Ecosystems. Studies in health technology and informatics. 2024 314:3-13. PMID: 38784996.
Du X, Dastmalchi F, Diller MA, [et al., including Brochhausen M]. An Automated Workflow Composition System for Liquid Chromatography-Mass Spectrometry Metabolomics Data Processing. Journal of the American Society for Mass Spectrometry. 2023. PMID: 37874901. PMCID: PMC12135213.
Zayas CE, Whorton JM, Sexton KW, [et al., including Brochhausen M]. Development and validation of the early warning system scores ontology. Journal of biomedical semantics. 2023 14(1):14. PMID: 37730667. PMCID: PMC10510162.
Blobel B, Ruotsalainen P, Brochhausen M, [et al.]. Designing and Managing Advanced, Intelligent and Ethical Health and Social Care Ecosystems. Journal of personalized medicine. 2023 13(8). PMID: 37623460. PMCID: PMC10455576.
Du X, Dastmalchi F, Ye H, [et al., including Brochhausen M]. Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software. Metabolomics : Official journal of the Metabolomic Society. 2023 19(2):11. PMID: 36745241. PMCID: PMC12087353.
Kreuzthaler M, Brochhausen M, Zayas C, [et al.]. Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems. Frontiers in medicine. 2023 10:1073313. PMID: 37007792. PMCID: PMC10050682.
Zayas CE, Williams TB, Brochhausen M. Experiences with developing and implementing a courageous conversations pilot classroom through synchronous meetings via zoom. Journal of clinical and translational science. 2023 7(1):e32. PMID: 36845317. PMCID: PMC9947604.
Bona JP, Utecht J, Kemp AS, [et al., including Brochhausen M]. The informed consent form navigator: a tool for producing readable and compliant consent documents. Journal of clinical and translational science. 2023 7(1):e3. PMID: 36755541. PMCID: PMC9879912.
Bona JP, Utecht J, Bost S, [et al., including Brochhausen M]. The PRISM semantic cohort builder: a novel tool to search and access clinical data in TCIA imaging collections. Physics in medicine and biology. 2022 68(1). PMID: 36279873. PMCID: PMC9855624.
Singh N, Braun N, Hogan W, Brochhausen M. Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO). Studies in health technology and informatics. 2022 295:302-303. PMID: 35773868.
Brochhausen M, Whorton JM, Zayas CE, [et al.]. Assessing the Need for Semantic Data Integration for Surgical Biobanks-A Knowledge Representation Perspective. Journal of personalized medicine. 2022 12(5). PMID: 35629179. PMCID: PMC9147545.
Du X, Aristizabal-Henao JJ, Garrett TJ, [et al., including Brochhausen M]. A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research. Metabolites. 2022 12(1). PMID: 35050209. PMCID: PMC8779534.
Brochhausen M, Hester DM. Data Properties or Analytical Methodologies: Too Much Attention to the Former Ignores Concerns About the Latter. The American journal of bioethics : AJOB. 2021 21(12):70-72. PMID: 34806969.
Brochhausen M, Bost SJ, Singh N, [et al.]. Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model. Studies in health technology and informatics. 2021 285:159-164. PMID: 34734868.
Blobel B, Ruotsalainen P, Brochhausen M. Autonomous Systems and Artificial Intelligence - Hype or Prerequisite for P5 Medicine?. Studies in health technology and informatics. 2021 285:3-14. PMID: 34734847.
Vita R, Zheng J, Jackson R, [et al., including Brochhausen M]. Standardization of assay representation in the Ontology for Biomedical Investigations. Database : the journal of biological databases and curation. 2021 2021. PMID: 34244718. PMCID: PMC8271124.
Fedorov A, Hancock M, Clunie D, [et al., including Brochhausen M]. DICOM re-encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules. Medical physics. 2020. PMID: 32772385. PMCID: PMC7721965.