Thidathip Wongsurawat, PhD

Research Program: Cancer Therapeutics Faculty Rank: Instructor Campus: University of Arkansas for Medical Sciences College: College of Medicine Department: Biomedical Informatics

Contact Information

• Email Address: TWONGSURAWAT@UAMS.EDU
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Publications

• Hatrongjit R, Fittipaldi N, Jenjaroenpun P, [et al., including Wongsurawat T]. Genomic comparison of two Streptococcus suis serotype 1 strains recovered from porcine and human disease cases. Scientific reports. 2023 13(1):5380. PMID: 37009816. PMCID: PMC10068604.
• Khine NO, Wongsurawat T, Jenjaroenpun P, [et al.]. Comparative genomic analysis of Colistin resistant Escherichia coli isolated from pigs, a human and wastewater on colistin withdrawn pig farm. Scientific reports. 2023 13(1):5124. PMID: 36991093. PMCID: PMC10060365.
• Kruasuwan W, Jenjaroenpun P, Arigul T, [et al., including Wongsurawat T]. Nanopore Sequencing Discloses Compositional Quality of Commercial Probiotic Feed Supplements. Scientific reports. 2023 13(1):4540. PMID: 36941307. PMCID: PMC10027865.
• Taylor MK, Williams EP, Xue Y, [et al., including Wongsurawat T]. Dissecting Phenotype from Genotype with Clinical Isolates of SARS-CoV-2 First Wave Variants. Viruses. 2023 15(3). PMID: 36992320. PMCID: PMC10059853.
• Brizuela J, Kajeekul R, Roodsant TJ, [et al., including Wongsurawat T]. Streptococcus suis outbreak caused by an emerging zoonotic strain with acquired multi-drug resistance in Thailand. Microbial genomics. 2023 9(2). PMID: 36790403. PMCID: PMC9997742.
• Wanichthanarak K, Nookaew I, Pasookhush P, [et al., including Wongsurawat T]. Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae. BMC plant biology. 2023 23(1):59. PMID: 36707785. PMCID: PMC9883906.
• Ledlod S, Thuamkaew P, Luecha P, [et al., including Wongsurawat T]. Complete Genome Sequences of Two Salmonella enterica Strains Isolated from Chicken Carcass Rinse Water in Thailand. Microbiology resource announcements. 2023 12(1):e0123522. PMID: 36598278. PMCID: PMC9872574.
• Arigul T, Jenjaroenpun P, Wankaew N, [et al., including Wongsurawat T]. Complete Genome Sequences of Three Salmonella Strains Obtained from a Poultry Production Farm in Thailand. Microbiology resource announcements. 2023:e0110422. PMID: 36651783. PMCID: PMC9933732.
• Yaikhan T, Kampakdee I, Jenjaroenpun P, [et al., including Wongsurawat T]. Whole-Genome Sequence of a Clinical Enterococcus gallinarum Strain in a Positive Hemoculture from Siriraj Hospital, Thailand. Microbiology resource announcements. 2022 11(12):e0060522. PMID: 36318019. PMCID: PMC9753668.
• Boueroy P, Wongsurawat T, Jenjaroenpun P, [et al.]. Publisher Correction: Plasmidome in mcr-1 harboring carbapenem-resistant enterobacterales isolates from human in Thailand. Scientific reports. 2022 12(1):21517. PMID: 36513889. PMCID: PMC9747957.
• Chaemsaithong P, Romero R, Pongchaikul P, [et al., including Wongsurawat T]. Rapid diagnosis of intra-amniotic infection using nanopore-based sequencing. Journal of perinatal medicine. 2022. PMID: 36503654.
• Boueroy P, Wongsurawat T, Jenjaroenpun P, [et al.]. Plasmidome in mcr-1 harboring carbapenem-resistant enterobacterales isolates from human in Thailand. Scientific reports. 2022 12(1):19051. PMID: 36351969. PMCID: PMC9646850.
• Khongchatee A, Wongsurawat T, Suriye K, [et al.]. Full-Length 16S rRNA Gene Amplicon and Metagenome Taxonomic Profiling of Beneficial Microbes in Poultry and Swine Probiotic Product. Microbiology resource announcements. 2022 11(10):e0069022. PMID: 36154187. PMCID: PMC9584310.
• Sudjai A, Suriye K, Kruasuwan W, [et al., including Wongsurawat T]. Long-Read 16S rRNA Amplicon and Metagenomic Data of Swine Feed-Additive Probiotics Product. Microbiology resource announcements. 2022 11(9):e0039722. PMID: 35993704. PMCID: PMC9476918.
• Udaondo Z, Abram KZ, Gulley T, [et al., including Wongsurawat T]. Complete Genome Sequence of a Non-Carbapenemase-Producing Carbapenem-Resistant Providencia rettgeri Strain Isolated from a Clinical Urine Sample in Arkansas. Microbiology resource announcements. 2022 11(8):e0047422. PMID: 35894621. PMCID: PMC9387286.
• Phumthanakorn N, Wongsurawat T, Jenjaroenpun P, [et al.]. Novel Organization of the Staphylococcal Cassette Chromosome mec Composite Island in Clinical Staphylococcus haemolyticus and Staphylococcus hominis Subspecies hominis Isolates from Dogs. Microbiology spectrum. 2022:e0099722. PMID: 35862947. PMCID: PMC9430635.
• Sathitkowitchai W, Wongsurawat T, Jenjaroenpun P, [et al.]. Complete Genome Sequences of Mannanase-Producing Bacillus and Niallia Strains Isolated from the Intestine of the Black Tiger Shrimp (Penaeus monodon). Microbiology resource announcements. 2022:e0011222. PMID: 35616376. PMCID: PMC9202390.
• Suwala AK, Felix M, Friedel D, [et al., including Wongsurawat T]. Oligosarcomas, IDH-mutant are distinct and aggressive. Acta neuropathologica. 2022 143(2):263-281. PMID: 34967922. PMCID: PMC8742817.
• Henriksen RA, Jenjaroenpun P, Sjøstrøm IB, [et al., including Wongsurawat T]. Circular DNA in the human germline and its association with recombination. Molecular cell. 2022 82(1):209-217.e7. PMID: 34951964.
• Nokchan N, Wongsurawat T, Jenjaroenpun P, [et al.]. Whole-genome sequence analysis of high-level penicillin-resistant strains and antimicrobial susceptibility of Neisseria gonorrhoeae clinical isolates from Thailand. PloS one. 2022 17(7):e0271657. PMID: 35905043. PMCID: PMC9337635.
• Wongsurawat T, Jenjaroenpun P, Wanchai V, Nookaew I. Native RNA or cDNA Sequencing for Transcriptomic Analysis: A Case Study on Saccharomyces cerevisiae. Frontiers in bioengineering and biotechnology. 2022 10:842299. PMID: 35497361. PMCID: PMC9039254.
• Wongsurawat T, Jenjaroenpun P, Nookaew I. Direct Sequencing of RNA and RNA Modification Identification Using Nanopore. Methods in molecular biology (Clifton, N.J.). 2022 2477:71-77. PMID: 35524112.
• Nokchan N, Wongsurawat T, Jenjaroenpun P, [et al.]. Complete Genome Sequence of Schaalia turicensis Strain CT001, Isolated from a Patient with Gonococcal Urethritis in Thailand. Microbiology resource announcements. 2021 10(50):e0083621. PMID: 34913715. PMCID: PMC8675252.
• Sodsai P, Jenjaroenpun P, Hirankarn N, [et al., including Wongsurawat T]. Erratum for Sodsai et al., "Complete Genome Sequences of Mycobacterium farcinogenes Strains Isolated from Clinical Specimens from Patients in Thailand". Microbiology resource announcements. 2021 10(49):e0114521. PMID: 34881987. PMCID: PMC8656389.
• Sodsai P, Jenjaroenpun P, Hirankarn N, [et al., including Wongsurawat T]. Complete Genome Sequences of Mycobacterium farcinogenes Strains Isolated from Clinical Specimens from Patients in Thailand. Microbiology resource announcements. 2021 10(46):e0100521. PMID: 34792375. PMCID: PMC8601135.
• Kueakulpattana N, Wannigama DL, Luk-In S, [et al., including Wongsurawat T]. Multidrug-resistant Neisseria gonorrhoeae infection in heterosexual men with reduced susceptibility to ceftriaxone, first report in Thailand. Scientific reports. 2021 11(1):21659. PMID: 34737332. PMCID: PMC8569152.
• Cherdtrakulkiat T, Wongsurawat T, Jenjaroenpun P, [et al.]. Complete Genome Sequence of Neisseria gonorrhoeae Multilocus Sequence Type ST7363 Isolated from Thailand. Microbiology resource announcements. 2021 10(41):e0057321. PMID: 34647806. PMCID: PMC8515890.
• Alkam D, Wongsurawat T, Nookaew I, [et al.]. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a Staphylococcus aureus TnSeq library subjected to PCR-based and amplification-free enrichment methods. Microbial genomics. 2021 7(10). PMID: 34596508. PMCID: PMC8627206.
• Udaondo Z, Sittikankaew K, Uengwetwanit T, [et al., including Wongsurawat T]. Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon. Life (Basel, Switzerland). 2021 11(8). PMID: 34440606. PMCID: PMC8399832.
• Chopjitt P, Wongsurawat T, Jenjaroenpun P, [et al.]. Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Harboring Staphylococcal Cassette Chromosome mec Type IX, Isolated from a Fatal Bacteremic Pneumonia Case. Microbiology resource announcements. 2021 10(30):e0061621. PMID: 34323603. PMCID: PMC8320449.
• Kunadirek P, Chuaypen N, Jenjaroenpun P, [et al., including Wongsurawat T]. Cell-Free DNA Analysis by Whole-Exome Sequencing for Hepatocellular Carcinoma: A Pilot Study in Thailand. Cancers. 2021 13(9). PMID: 34066484. PMCID: PMC8125351.
• Wongsurawat T, Punyadee N, Jenjaroenpun P, [et al.]. RNA Sequencing Data Sets and Their Whole-Genome Sequence Assembly of Dengue Virus from Three Serial Passages in Vero Cells. Microbiology resource announcements. 2021 10(17). PMID: 33927030. PMCID: PMC8086204.
• Uengwetwanit T, Pootakham W, Nookaew I, [et al., including Wongsurawat T]. A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes. Molecular ecology resources. 2021. PMID: 33586292. PMCID: PMC8197738.
• Yongkiettrakul S, Wongsurawat T, Jenjaroenpun P, [et al.]. Genome sequences of antibiotic-resistant Streptococcus suis strains isolated from human patients and diseased and asymptomatic pigs in Thailand. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2021 87:104674. PMID: 33316429. PMCID: PMC8561417.
• Kerdsin A, Hatrongjit R, Wongsurawat T, [et al.]. Genomic Characterization of Streptococcus suis Serotype 24 Clonal Complex 221/234 From Human Patients. Frontiers in microbiology. 2021 12:812436. PMID: 35003043. PMCID: PMC8733411.
• Taylor MK, Williams EP, Wongsurawat T, [et al.]. Corrigendum: Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Frontiers in cellular and infection microbiology. 2021 11:804914. PMID: 35141171. PMCID: PMC8819723.
• Jenjaroenpun P, Wanchai V, Ono-Moore KD, [et al., including Wongsurawat T]. Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing. Microbiology resource announcements. 2020 10(1). PMID: 33334896. PMCID: PMC8407695.
• Hatrongjit R, Kerdsin A, Takeuchi D, [et al., including Wongsurawat T]. Genomic Analysis of Aeromonas veronii C198, a Novel Mcr-3.41-Harboring Isolate from a Patient with Septicemia in Thailand. Pathogens (Basel, Switzerland). 2020 9(12). PMID: 33317051. PMCID: PMC7763265.
• Xu YZ, Jenjaroenpun P, Wongsurawat T, [et al.]. Activation-induced cytidine deaminase localizes to G-quadruplex motifs at mutation hotspots in lymphoma. NAR cancer. 2020 2(4):zcaa029. PMID: 33094287. PMCID: PMC7556405.
• Desai S, Baghal A, Wongsurawat T, [et al.]. Chest imaging representing a COVID-19 positive rural U.S. population. Scientific data. 2020 7(1):414. PMID: 33235265. PMCID: PMC7686304.
• Chopjitt P, Wongsurawat T, Jenjaroenpun P, [et al.]. Complete Genome Sequences of Four Extensively Drug-Resistant Acinetobacter baumannii Isolates from Thailand. Microbiology resource announcements. 2020 9(40). PMID: 33004459. PMCID: PMC7530931.
• Nookaew I, Jenjaroenpun P, Du H, [et al., including Wongsurawat T]. Detection and discrimination of DNA adducts differing in size, regiochemistry and functional group by nanopore sequencing. Chemical research in toxicology. 2020. PMID: 32799528. PMCID: PMC7752846.
• Jenjaroenpun P, Wongsurawat T, Wadley TD, [et al.]. Decoding the epitranscriptional landscape from native RNA sequences. Nucleic acids research. 2020. PMID: 32710622. PMCID: PMC7826254.
• Wongsurawat T, Gupta A, Jenjaroenpun P, [et al.]. Author Correction: R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses. Scientific reports. 2020 10(1):12173. PMID: 32678142. PMCID: PMC7368006.
• Chokesajjawatee N, Santiyanont P, Chantarasakha K, [et al., including Wongsurawat T]. Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis. Scientific reports. 2020 10(1):10241. PMID: 32581273. PMCID: PMC7314741.
• Wongsurawat T, Jenjaroenpun P, De Loose A, [et al.]. A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma. Acta neuropathologica communications. 2020 8(1):87. PMID: 32563269. PMCID: PMC7305623.
• Kandel S, Sripiboon S, Jenjaroenpun P, [et al., including Wongsurawat T]. 16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand. Microbiology resource announcements. 2020 9(24). PMID: 32527771. PMCID: PMC7291096.
• Udaondo Z, Jenjaroenpun P, Wongsurawat T, [et al.]. Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing. Open forum infectious diseases. 2020 7(6):ofaa180. PMID: 32550237. PMCID: PMC7291683.
• Vorapreeda T, Thammarongtham C, Palasak T, [et al., including Wongsurawat T]. Systematic genome analysis of a novel arachidonic acid-producing strain uncovered unique metabolic traits in the production of acetyl-CoA-derived products in Mortierellale fungi. Gene. 2020 741:144559. PMID: 32169630.
• Cherdtrakulkiat T, Wongsurawat T, Jenjaroenpun P, [et al.]. Complete Genome Sequences of Three Neisseria gonorrhoeae Isolates from Thailand with Multidrug Resistance and Multilocus Sequence Type 1903. Microbiology resource announcements. 2020 9(19). PMID: 32381609. PMCID: PMC7206487.
• Wongsurawat T, Gupta A, Jenjaroenpun P, [et al.]. R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses. Scientific reports. 2020 10(1):6389. PMID: 32286400. PMCID: PMC7156643.
• Jenjaroenpun P, Wongsurawat T, Udaondo Z, [et al.]. Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. Microbiology resource announcements. 2020 9(6). PMID: 32029568. PMCID: PMC7005116.
• Patterson JD, Wongsurawat T, Rodriguez A. A Glioblastoma Genomics Primer for Clinicians. Medical research archives. 2020 8(2). PMID: 32258388. PMCID: PMC7111506.
• Skinner CM, Nookaew I, Ewing LE, [et al., including Wongsurawat T]. Potential Probiotic or Trigger of Gut Inflammation - The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract. Journal of dietary supplements. 2020 17(5):543-560. PMID: 32400224. PMCID: PMC7470626.
• Pornputtapong N, Acheampong DA, Patumcharoenpol P, [et al., including Wongsurawat T]. KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis. Frontiers in bioengineering and biotechnology. 2020 8:556413. PMID: 33072720. PMCID: PMC7538862.
• Taylor MK, Williams EP, Wongsurawat T, [et al.]. Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species. Frontiers in cellular and infection microbiology. 2020 10:565591. PMID: 33163416. PMCID: PMC7591466.
• Angthong P, Uengwetwanit T, Pootakham W, [et al., including Wongsurawat T]. Optimization of high molecular weight DNA extraction methods in shrimp for a long-read sequencing platform. PeerJ. 2020 8:e10340. PMID: 33240651. PMCID: PMC7668203.
• Cheawchanlertfa P, Sutheeworapong S, Jenjaroenpun P, [et al., including Wongsurawat T]. Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes. PeerJ. 2020 8:e10343. PMID: 33240652. PMCID: PMC7676355.
• Woo CC, Liu W, Lin XY, [et al., including Wongsurawat T]. The interaction between 30b-5p miRNA and MBNL1 mRNA is involved in vascular smooth muscle cell differentiation in patients with coronary atherosclerosis. International journal of molecular sciences. 2019 21(1). PMID: 31861407. PMCID: PMC6982107.
• Alkam D, Jenjaroenpun P, Wongsurawat T, [et al.]. Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2019 75:103965. PMID: 31319177. PMCID: PMC6832845.
• Wongsurawat T, Nakagawa M, Atiq O, [et al.]. An assessment of Oxford Nanopore sequencing for human gut metagenome profiling: A pilot study of head and neck cancer patients. Journal of microbiological methods. 2019 166:105739. PMID: 31626891. PMCID: PMC6956648.
• Intarajak T, Udomchaiprasertkul W, Bunyoo C, [et al., including Wongsurawat T]. Genetic Aberration Analysis in Thai Colorectal Adenoma and Early-Stage Adenocarcinoma Patients by Whole-Exome Sequencing. Cancers. 2019 11(7). PMID: 31336886. PMCID: PMC6679221.
• Udaondo Z, Wongsurawat T, Jenjaroenpun P, [et al.]. Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. Microbiology resource announcements. 2019 8(15). PMID: 30975810. PMCID: PMC6460033.
• Gurley BJ, Miousse IR, Nookaew I, [et al., including Wongsurawat T]. Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F? Mice. Nutrients. 2019 11(4). PMID: 30987244. PMCID: PMC6521095.
• Wadley TD, Jenjaroenpun P, Wongsurawat T, [et al.]. Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775. Microbiology resource announcements. 2019 8(9). PMID: 30834378. PMCID: PMC6395863.
• Wongsurawat T, Jenjaroenpun P, Taylor MK, [et al.]. Rapid Sequencing of Multiple RNA Viruses in Their Native Form. Frontiers in microbiology. 2019 10:260. PMID: 30858830. PMCID: PMC6398364.
• Cabal A, Jun SR, Jenjaroenpun P, [et al., including Wongsurawat T]. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. Microbial ecology. 2018 76(3):801-813. PMID: 29445826. PMCID: PMC6132499.
• Kuznetsov VA, Bondarenko V, Wongsurawat T, [et al.]. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers. Nucleic acids research. 2018 46(15):8023. PMID: 30053183. PMCID: PMC6125685.
• Kuznetsov VA, Bondarenko V, Wongsurawat T, [et al.]. Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers. Nucleic acids research. 2018 46(15):7566-7585. PMID: 29945198. PMCID: PMC6125637.
• Wongsurawat T, Athipanyasilp N, Jenjaroenpun P, [et al.]. Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand. Emerging infectious diseases. 2018 24(9). PMID: 29985788. PMCID: PMC6106416.
• Wongsurawat T, Jenjaroenpun P, Athipanyasilp N, [et al.]. Genome Sequences of Zika Virus Strains Recovered from Amniotic Fluid, Placenta, and Fetal Brain of a Microcephaly Patient in Thailand, 2017. Microbiology resource announcements. 2018 7(11). PMID: 30533643. PMCID: PMC6256666.
• Derda AA, Woo CC, Wongsurawat T, [et al.]. Gene expression profile analysis of aortic vascular smooth muscle cells reveals upregulation of cadherin genes in myocardial infarction patients. Physiological genomics. 2018 50(8):648-657. PMID: 29775430.
• Jenjaroenpun P, Wongsurawat T, Pereira R, [et al.]. Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D. Nucleic acids research. 2018 46(7):e38. PMID: 29346625. PMCID: PMC5909453.
• Wongsurawat T, Woo CC, Giannakakis A, [et al.]. Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients. Data in brief. 2018 17:1112-1135. PMID: 29876469. PMCID: PMC5988399.
• Wongsurawat T, Woo CC, Giannakakis A, [et al.]. Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction. Atherosclerosis. 2018 271:237-244. PMID: 29395098.
• Apopa PL, Alley L, Penney RB, [et al., including Wongsurawat T]. PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin. Frontiers in microbiology. 2018 9:1757. PMID: 30127774. PMCID: PMC6087756.
• Alkam D, Wongsurawat T, Jenjaroenpun P, [et al.]. Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA. Genome announcements. 2017 5(32). PMID: 28798162. PMCID: PMC5552971.
• Jenjaroenpun P, Wongsurawat T, Sutheeworapong S, Kuznetsov VA. R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops. Nucleic acids research. 2017 45(D1):D119-D127. PMID: 27899586. PMCID: PMC5210542.